PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_29438_BGI-A2_v1.0
Common NameF383_15068
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 648aa    MW: 73899.8 Da    PI: 8.1089
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_29438_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.85.8e-09463504240
                                 SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHH CS
             Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqc 40 
                                 ++WT+eE ell ++ +++++g   +W+ I++++g+gR+ +++
  Cotton_A_29438_BGI-A2_v1.0 463 KPWTKEEIELLRKGTQKYPKGtsrRWEVISEYIGTGRSVEEI 504
                                 69***********************************99876 PP

2Myb_DNA-binding29.22.2e-09590635245
                                 SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
             Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 
                                 g W++  +  l++a k ++++   +W+++a  ++ g+tl+qck ++ 
  Cotton_A_29438_BGI-A2_v1.0 590 GVWSAVQERALIQALKTFPKEtsqRWERVATAVP-GKTLNQCKKKFA 635
                                 78********************************.********9985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF465652.36E-2092175IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1108.7E-2194199IPR001623DnaJ domain
SMARTSM002712.1E-1496171IPR001623DnaJ domain
CDDcd062577.86E-1397168IPR001623DnaJ domain
PfamPF002261.7E-1697176IPR001623DnaJ domain
PROSITE profilePS5007618.34997179IPR001623DnaJ domain
PRINTSPR006251.6E-7102120IPR001623DnaJ domain
PRINTSPR006251.6E-7120135IPR001623DnaJ domain
PRINTSPR006251.6E-7151171IPR001623DnaJ domain
PROSITE patternPS006360156175IPR018253DnaJ domain, conserved site
Gene3DG3DSA:1.10.10.603.3E-6456504IPR009057Homeodomain-like
PROSITE profilePS512937.076460515IPR017884SANT domain
SMARTSM007171.1E-7461514IPR001005SANT/Myb domain
PfamPF002492.2E-7463504IPR001005SANT/Myb domain
SuperFamilySSF466894.86E-8463506IPR009057Homeodomain-like
CDDcd001676.80E-6464504No hitNo description
Gene3DG3DSA:1.10.10.604.3E-6586634IPR009057Homeodomain-like
SuperFamilySSF466893.74E-9587638IPR009057Homeodomain-like
PROSITE profilePS512939.533587642IPR017884SANT domain
SMARTSM007174.3E-9588640IPR001005SANT/Myb domain
PfamPF002491.9E-7590634IPR001005SANT/Myb domain
CDDcd001675.37E-6592638No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 648 aa     Download sequence    Send to blast
MAVRTSIQLL SYSQELVDGQ PLYVSSNCLP VKALKYEPAG HAFHNAALKL FGCEEDDTTE  60
VDDQKVGNDK EQAYMPSSDS YSNKGKKKSG ADGKQQDHYA LLGLSHLRYL ATEDQIRKSY  120
REAALRHHPD KLANLLLAEE TEAAKQAKKD EIENHFKSIQ EAYEILIDPI KRRIYDSTDE  180
FDDEIPTECA PQDFFKVFGP AFMRNGRWSV TQPIPSLGDD STSLKDVDNF YNFWYSFKSW  240
REFPHADEYD LEQAESRDHR RWMERQNAKL SEKARKEEYV RIRALVDNAY RRDPRILRRK  300
EEEKAEKQRK KEAKVRAKQL QEEEAARAAE EERRRKEEEE KRAAEAALQH KKNKEKEKKL  360
LRKERTRLRA LSAPVLSQHL LDLSEEDVES LCMTLGFEQL RSLCDKMDNK EALERAKLIQ  420
DARGYNSNTE EKIVDDANGS HLNGSVDSNG SILSSSSSEK KEKPWTKEEI ELLRKGTQKY  480
PKGTSRRWEV ISEYIGTGRS VEEILKATKT VLLQKPDATK AFDSFLEKRK PAATIASPLS  540
TREEVEGVSM PSRTENTTVK TSSAEDSGKA ASNPVDVVSG NGVSSSSEQG VWSAVQERAL  600
IQALKTFPKE TSQRWERVAT AVPGKTLNQC KKKFALLKEN FRSKKSTA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012448958.10.0PREDICTED: dnaJ homolog subfamily C member 2-like
RefseqXP_012448957.10.0PREDICTED: dnaJ homolog subfamily C member 2-like
RefseqXP_012448956.10.0PREDICTED: dnaJ homolog subfamily C member 2-like
TrEMBLA0A0B0N5M10.0A0A0B0N5M1_G
STRINGPOPTR_0001s07310.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23612755
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11450.10.0DnaJ domain ;Myb-like DNA-binding domain